|
|
|
|
Statistical Summary of Pathguide Resources
Note that some enumerations, such as the resources under Availability, are exclusive while others, such as those under Tools, may count the same resource for every criteria it satisfies.
Unelss otherwise noted, the values represent the number or resources that contain/satisfy the specified data/criteria.
The "Contents" section also includes values denoted as "Totals". This is a simple summation and does not account for any overlaps in data between the resources.
| | Total Resources | 328 | | Resources with Primary Data Sources | 160 | | Resources with Secondary Data Sources | 155 |
|
|
| | Free to all users | 238 | | Free to academic users | 37 | | Not currently available | 28 | | License purchase required | 18 | | Unknown | 7 |
|
|
| | Browsing / Canned queries | 232 | | Keyword searches | 219 | | Download in other format | 127 | | Download in BioPAX format | 20 | | Download in SBML format | 20 | | Download in PSI format | 19 | | SQL queries | 3 | | Download in CellML format | 2 |
|
|
| | Pathway diagram tools | 47 | | Interaction or functional association prediction | 41 | | Pathway discovery tools | 21 | | Text mining | 12 | | Expression analysis | 7 |
|
|
| | Homo sapiens | 91 | | Mus musculus | 53 | | Saccharomyces cerevisiae | 38 | | Rattus norvegicus | 34 | | Drosophila melanogaster | 31 | | Caenorhabditis elegans | 27 | | Arabidopsis thaliana | 26 | | Escherichia coli | 25 | | Helicobacter pylori | 12 | | Bos taurus | 11 | | Plasmodium falciparum | 10 | | Danio rerio | 9 | | Oryza sativa | 9 | | Bacillus subtilis | 9 | | Schizosaccharomyces pombe | 7 | | Human immunodeficiency virus | 7 | | Xenopus laevis | 6 | | Hepatitis C virus | 5 | | Zea mays | 5 | | Chlamydomonas reinhardtii | 3 | | Dictyostelium discoideum | 3 | | Mycoplasma pneumoniae | 2 | | Pneumocystis carinii | 1 | | Takifugu rubripes | 1 |
|
|
| | Protein-Protein Interactions | 132 | | Metabolic Pathways | 73 | | Signaling Pathways | 62 | | Transcription Factors / Gene Regulatory Networks | 51 | | Protein-Compound Interactions | 43 | | Pathway Diagrams | 38 | | Protein Sequence Focused | 20 | | Genetic Interaction Networks | 9 | | Other | 14 |
|
|
| | Resources containing small molecules | 38 | | Total small molecules | 250,317 | | Resources containing genes/proteins | 110 | | Total genes/proteins | 28,114,669 | | Resources containing interactions/reactions | 131 | | Total interactions/reactions | 205,136,344 | | Resources containing pathways | 59 | | Total pathways | 151,025 | | Resources containing experiments | 37 | | Total experiments | 913,443 |
|
|
|
|
|
|
|
|
