| EcoCyc | | Encyclopedia of E. coli Genes and Metabolism | | http://ecocyc.org/ | | February 20th, 2017 | | EcoCyc is a bioinformatics database that describes the genome and the biochemical machinery of E. coli K12 MG1655. The long-term goal of the project is to describe the molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of E. coli. EcoCyc is an electronic reference source for E. coli biologists, and for biologists who work with related microorganisms. | | | | Primary | | Free to academic users | EcoCyc: an encyclopedia of Escherichia coli genes and metabolism
Karp PD, Riley M, Paley SM, Pelligrini-Toole A.
Nucleic Acids Res. 1996 Jan 1;24(1):32-9
EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism.
Karp PD, Riley M, Paley SM, Pellegrini-Toole A, Krummenacker M.
Nucleic Acids Res. 1997 Jan 1;25(1):43-51
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism
Karp PD, Riley M, Paley SM, Pellegrini-Toole A, Krummenacker M.
Nucleic Acids Res. 1998 Jan 1;26(1):50-3
The EcoCyc and MetaCyc databases
Karp PD, Riley M, Saier M, Paulsen IT, Paley SM, Pellegrini-Toole A.
Nucleic Acids Res. 2000 Jan 1;28(1):56-9
The EcoCyc Database.
Karp PD, Riley M, Saier M, Paulsen IT, Collado-Vides J, Paley SM, Pellegrini-Toole A, Bonavides C, Gama-Castro S
Nucleic Acids Res. 2002 Jan 1;30(1):56-8
EcoCyc: a comprehensive database resource for Escherichia coli.
Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gil M, Karp PD.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D334-7
EcoCyc: A comprehensive view of Escherichia coli biology.
Keseler IM, Bonavides-Marti?nez C, Collado-Vides J, Gama-Castro S, Gunsalus RP, Aaron Johnson D, Krummenacker M, Nolan LM, Paley S, Paulsen IT, Peralta-Gil M, Santos-Zavaleta A, Shearer AG, Karp PD.
Nucleic Acids Res. 2008 Oct 30.
EcoCyc: a comprehensive database of Escherichia coli biology.
Keseler IM, Collado-Vides J, Santos-Zavaleta A, Peralta-Gil M, Gama-Castro S, Muniz-Rascado L, Bonavides-Martinez C, Paley S, Krummenacker M, Altman T, Kaipa P, Spaulding A, Pacheco J, Latendresse M, Fulcher C, Sarker M, Shearer AG, Mackie A, Paulsen I, Gunsalus RP, Karp PD
Nucleic Acids Res. 2011 Jan;39(Database issue):D583-90.
EcoCyc: fusing model organism databases with systems biology.
Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martínez C, Fulcher C, Huerta AM, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Schröder I, Shearer AG, Subhraveti P, Travers M, Weerasinghe D, Weiss V, Collado-Vides J, Gunsalus RP, Paulsen I, Karp PD
Nucleic Acids Res. 2013 Jan;41(Database issue):D605-12.
Dead end metabolites--defining the known unknowns of the E. coli metabolic network.
Mackie A, Keseler IM, Nolan L, Karp PD, Paulsen IT.
PLoS One. 2013 Sep 23;8(9):e75210.
Addition of Escherichia coli K-12 growth observation and gene essentiality data to the EcoCyc database.
Mackie A, Paley S, Keseler IM, Shearer A, Paulsen IT, Karp PD.
J Bacteriol. 2014 Mar;196(5):982-8.
Curation accuracy of model organism databases.
Keseler IM, Skrzypek M, Weerasinghe D, Chen AY, Fulcher C, Li GW, Lemmer KC, Mladinich KM, Chow ED, Sherlock G, Karp PD.
Database (Oxford). 2014 Jun 12;2014. pii: bau058.
A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.
Weaver DS, Keseler IM, Mackie A, Paulsen IT, Karp PD.
BMC Syst Biol. 2014 Jun 30;8:79.
The EcoCyc Database.
Karp PD, Weaver D, Paley S, Fulcher C, Kubo A, Kothari A, Krummenacker M, Subhraveti P, Weerasinghe D, Gama-Castro S, Huerta AM, Muniz-Rascado L, Bonavides-Martinez C, Weiss V, Peralta-Gil M, Santos-Zavaleta A, Schroder I, Mackie A, Gunsalus R, Collado-Vides J, Keseler IM, Paulsen I.
EcoSal Plus. 2014 May;6(1).
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
Keseler IM, Mackie A, Santos-Zavaleta A, Billington R, Bonavides-Martinez C, Caspi R, Fulcher C, Gama-Castro S, Kothari A, Krummenacker M, Latendresse M, Muniz-Rascado L, Ong Q, Paley S, Peralta-Gil M, Subhraveti P, Velazquez-Ramirez DA, Weaver D, Collado-Vides J, Paulsen I, Karp PD.
Nucleic Acids Res. 2017 Jan 4;45(D1):D543-D550.
| | Metabolic Pathways | | Pathway diagram tools, Pathway discovery tools | | Genes / Proteins: | 4,489 | | Interactions / Reactions: | 2,715 | | Pathways: | 345 | | Experiments / PubMed IDs: | 33,843 | | Last Content Update: | August 15th, 2017 |
| | Escherichia coli | | 705 |  |
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