| BioCyc | | BioCyc Knowledge Library | | http://biocyc.org/ | | February 18th, 2017 | | The BioCyc collection of databases provides electronic reference sources on the pathways and genomes of different organisms.
The BioCyc Web site can be used to visualize individual metabolic pathways, or to view the complete metabolic map of an organism. The latter diagram can be used to analyze gene expression, proteomics, or metabolomics data using the Omics Viewers, such as to produce animated views of time-course gene-expression experiments. | | | | Secondary | | License purchase required | Querying and computing with BioCyc databases
Krummenacker M, Paley S, Mueller L, Yan T, Karp PD
Bioinformatics. 2005 Aug 15;21(16):3454-5
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
Karp PD, Ouzounis CA, Moore-Kochlacs C, Goldovsky L, Kaipa P, Ahren D, Tsoka S, Darzentas N, Kunin V, Lopez-Bigas N
Nucleic Acids Res. 2005 Oct 24;33(19):6083-9.
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD.
Nucleic Acids Res. 2008 Jan;36(Database issue):D623-31
Using the MetaCyc pathway database and the BioCyc database collection
Caspi R, Karp PD
Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:Unit1.17
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD.
Nucleic Acids Res. 2010;38 (Database issue):D473-D479
Browsing metabolic and regulatory networks with BioCyc.
Latendresse M, Paley S, Karp PD
Methods Mol Biol. 2012;804:197-216.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD.
Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71.
Computational Metabolomics Operations at BioCyc.org.
Karp PD, Billington R, Holland TA, Kothari A, Krummenacker M, Weaver D, Latendresse M, Paley S.
Metabolites. 2015 May 22;5(2):291-310.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD.
Nucleic Acids Res. 2016 Jan 4;44(D1):D471-80.
| | Metabolic Pathways | | | Statistics are unavailable | | Last Content Update: | August 15th, 2017 |
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