| Araport | | Arabidopsis Information Portal | | https://www.araport.org/ | | October 2nd, 2017 | | Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and protein reports with orthology, expression, interactions and the latest annotation, plus analysis tools, community apps, and web services. Additionally, Araport users can query and view gene structure data with powerful GMOD software including InterMine, JBrowse and GBrowse. In particular, ThaleMine enables the analysis of Arabidopsis thaliana genes, proteins, gene expression, protein-protein interactions, orthologs, and more. While the database is freely accessible, an account is required to download any datasets. | | https://apps.araport.org/thalemine/report.do?id=69073835 | | Secondary | | Free to all users | Taking the next step: building an Arabidopsis information portal.
International Arabidopsis Informatics Consortium.
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Araport: the Arabidopsis information portal.
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Gene Slider: sequence logo interactive data-visualization for education and research.
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Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Cheng CY, Krishnakumar V, Chan AP, Thibaud-Nissen F, Schobel S, Town CD.
Plant J. 2017 Feb;89(4):789-804.
ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery.
Krishnakumar V, Contrino S, Cheng CY, Belyaeva I, Ferlanti ES, Miller JR, Vaughn MW, Micklem G, Town CD, Chan AP.
Plant Cell Physiol. 2017 Jan 1;58(1):e4.
| | Protein-Protein Interactions, Metabolic Pathways, Genetic Interaction Networks | | | Genes / Proteins: | 38,194 | | Interactions / Reactions: | 116,549 | | Pathways: | 132 | | Experiments / PubMed IDs: | 30,356 | | Last Content Update: | June 21st, 2016 |
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