| MMDB | | Molecular Modeling Database | | http://www.ncbi.nlm.nih.gov/Structure/MMDB/docs/mmdb_search.html | | February 8th, 2017 | | The Molecular Modeling Database, as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, bimolecular interactions, and more. It is possible, for example, to find 3D structures for homologs of a protein of interest by following the "Related Structures" link in an Entrez Protein sequence record. | | | | Primary | | Free to all users | MMDB: an ASN.1 specification for macromolecular structure.
Ohkawa H, Ostell J, Bryant S.
Proc Int Conf Intell Syst Mol Biol. 1995;3:259-67.
MMDB: Entrez's 3D structure database.
Marchler-Bauer A, Addess KJ, Chappey C, Geer L, Madej T, Matsuo Y, Wang Y, Bryant SH.
Nucleic Acids Res. 1999 Jan 1;27(1):240-3.
MMDB: 3D structure data in Entrez.
Wang Y, Addess KJ, Geer L, Madej T, Marchler-Bauer A, Zimmerman D, Bryant SH.
Nucleic Acids Res. 2000 Jan 1;28(1):243-5.
MMDB: Entrez's 3D-structure database.
Wang Y, Anderson JB, Chen J, Geer LY, He S, Hurwitz DI, Liebert CA, Madej T, Marchler GH, Marchler-Bauer A, Panchenko AR, Shoemaker BA, Song JS, Thiessen PA, Yamashita RA, Bryant SH.
Nucleic Acids Res. 2002 Jan 1;30(1):249-52.
MMDB: Entrez's 3D-structure database.
Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH.
Nucleic Acids Res. 2003 Jan 1;31(1):474-7.
MMDB: annotating protein sequences with Entrez's 3D-structure database.
Wang Y, Addess KJ, Chen J, Geer LY, He J, He S, Lu S, Madej T, Marchler-Bauer A, Thiessen PA, Zhang N, Bryant SH.
Nucleic Acids Res. 2007 Jan;35(Database issue):D298-300.
MMDB: 3D structures and macromolecular interactions.
Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH.
Nucleic Acids Res. 2012 Jan;40(Database issue):D461-4.
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
Nucleic Acids Res. 2014 Jan;42(Database issue):D297-303.
| | Protein-Protein Interactions, Protein-Compound Interactions | | | Genes / Proteins: | 30,430 | | Interactions / Reactions: | 92,219 | | Last Content Update: | August 7th, 2017 |
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