| PlantTFDB | | Plant Transcription Factor Database | | http://planttfdb.cbi.pku.edu.cn/ | | March 8th, 2017 | | PlantTFDB is a database dedicated to plant transcription factors. The transcription factors are classified into 58 different families and a brief introduction and key references are presented for each family. Comprehensive annotations are made for each identified TF, including functional domains, 3D structures, gene ontology (GO), expression information derived from EST and microarray, and annotations in various databases such as UniProt, RefSeq, TransFac and STRING. In addition, PlantTFDB has a simple and user-friendly interface to allow users to query based on combined conditions or make sequence similarity search using BLAST. | | | | Primary | | Free to all users | DATF: a database of Arabidopsis transcription factors.
Guo A, He K, Liu D, Bai S, Gu X, Wei L, Luo J.
Bioinformatics. 2005 May 15;21(10):2568-9.
DRTF: a database of rice transcription factors.
Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J.
Bioinformatics. 2006 May 15;22(10):1286-7.
DPTF: a database of poplar transcription factors.
Zhu QH, Guo AY, Gao G, Zhong YF, Xu M, Huang M, Luo J.
Bioinformatics. 2007 May 15;23(10):1307-8.
PlantTFDB: a comprehensive plant transcription factor database.
Guo AY, Chen X, Gao G, Zhang H, Zhu QH, Liu XC, Zhong YF, Gu X, He K, Luo J.
Nucleic Acids Res. 2008 Jan;36(Database issue):D966-9.
Computational identification of plant transcription factors and the construction of the PlantTFDB database.
He K, Guo AY, Gao G, Zhu QH, Liu XC, Zhang H, Chen X, Gu X, Luo J.
Methods Mol Biol. 2010;674:351-68.
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database.
Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, Luo J.
Nucleic Acids Res. 2011 Jan;39(Database issue):D1114-7.
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors.
Jin J, Zhang H, Kong L, Gao G, Luo J.
Nucleic Acids Res. 2014 Jan;42(Database issue):D1182-7.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Jin J, He K, Tang X, Li Z, Lv L, Zhao Y, Luo J, Gao G.
Mol Biol Evol. 2015 Jul;32(7):1767-73.
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants.
Jin J, Tian F, Yang DC, Meng YQ, Kong L, Luo J, Gao G.
Nucleic Acids Res. 2017 Jan 4;45(D1):D1040-D1045.
| | Transcription Factors / Gene Regulatory Networks | | Interaction or functional association prediction | | Genes / Proteins: | 320,370 | | Last Content Update: | July 21st, 2017 |
| | Arabidopsis thaliana, Chlamydomonas reinhardtii, Oryza sativa, Zea mays | | 48 |  |
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