| SGN | | Sol Genomics Network | | http://solgenomics.net/ | | February 25th, 2017 | | The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information, such as genes and pathways, of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant. It contains the SolCyc Pathways Database (http://solcyc.solgenomics.net/). | | | | Primary | | Free to all users | The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.
Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD.
Plant Physiol. 2005 Jul;138(3):1310-7.
The SGN comparative map viewer.
Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD.
Bioinformatics. 2008 Feb 1;24(3):422-3.
A community-based annotation framework for linking solanaceae genomes with phenomes.
Menda N, Buels RM, Tecle I, Mueller LA.
Plant Physiol. 2008 Aug;147(4):1788-99.
A dynamic interface for capsaicinoid systems biology.
Mazourek M, Pujar A, Borovsky Y, Paran I, Mueller L, Jahn MM.
Plant Physiol. 2009 Aug;150(4):1806-21.
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl.
Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, Fischer-York T, Pujar A, Leto J, Gosselin J, Mueller LA.
Nucleic Acids Res. 2011 Jan;39(Database issue):D1149-55.
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database.
Tecle IY, Menda N, Buels RM, van der Knaap E, Mueller LA.
BMC Bioinformatics. 2010 Oct 21;11:525.
From manual curation to visualization of gene families and networks across Solanaceae plant species.
Pujar A, Menda N, Bombarely A, Edwards JD, Strickler SR, Mueller LA.
Database (Oxford). 2013 May 15;2013:bat028.
The Sol Genomics Network (SGN)--from genotype to phenotype to breeding.
Fernandez-Pozo N, Menda N, Edwards JD, Saha S, Tecle IY, Strickler SR, Bombarely A, Fisher-York T, Pujar A, Foerster H, Yan A, Mueller LA.
Nucleic Acids Res. 2015 Jan;43(Database issue):D1036-41.
| | Metabolic Pathways, Pathway Diagrams | | Pathway diagram tools | | Small Molecules: | 1,867 | | Genes / Proteins: | 30,868 | | Interactions / Reactions: | 2,642 | | Pathways: | 456 | | Last Content Update: | June 15th, 2017 |
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