| RCSB PDB | | The Research Collaboratory for Structural Bioinformatics Protein Data Bank | | http://www.rcsb.org/pdb/home/home.do | | March 15th, 2017 | | The RCSB PDB is a member of the Worldwide Protein Data Bank that curates and annotates Protein Data Bank data. Data can be accessed through simple searches and the database will return various information, such as general information, an interactive three-dimensional diagram, and options to download your findings. | | | | Primary | | Free to all users | The Protein Data Bank.
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE.
Nucleic Acids Res. 2000 Jan 1;28(1):235-42.
The distribution and query systems of the RCSB Protein Data Bank.
Bourne PE, Addess KJ, Bluhm WF, Chen L, Deshpande N, Feng Z, Fleri W, Green R, Merino-Ott JC, Townsend-Merino W, Weissig H, Westbrook J, Berman HM.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D223-5.
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema.
Deshpande N, Addess KJ, Bluhm WF, Merino-Ott JC, Townsend-Merino W, Zhang Q, Knezevich C, Xie L, Chen L, Feng Z, Green RK, Flippen-Anderson JL, Westbrook J, Berman HM, Bourne PE.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D233-7.
The RCSB PDB information portal for structural genomics.
Kouranov A, Xie L, de la Cruz J, Chen L, Westbrook J, Bourne PE, Berman HM.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D302-5.
Using the tools and resources of the RCSB protein data bank.
Dutta S, M Berman H, F Bluhm W.
Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:Unit1.9.
Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences.
Dutta S, Zardecki C, Goodsell DS, Berman HM.
J Appl Crystallogr. 2010 Oct 1;43(Pt 5):1224-1229.
Pre-calculated protein structure alignments at the RCSB PDB website.
Prlic A, Bliven S, Rose PW, Bluhm WF, Bizon C, Godzik A, Bourne PE.
Bioinformatics. 2010 Dec 1;26(23):2983-5.
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank.
Bluhm WF, Beran B, Bi C, Dimitropoulos D, Prlic A, Quinn GB, Rose PW, Shah C, Young J, Yukich B, Berman HM, Bourne PE.
Database (Oxford). 2011 Mar 7;2011:bar003.
The RCSB Protein Data Bank: new resources for research and education.
Rose PW, Bi C, Bluhm WF, Christie CH, Dimitropoulos D, Dutta S, Green RK, Goodsell DS, Prlic A, Quesada M, Quinn GB, Ramos AG, Westbrook JD, Young J, Zardecki C, Berman HM, Bourne PE.
Nucleic Acids Res. 2013 Jan;41(Database issue):D475-82.
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.
Quinn GB, Bi C, Christie CH, Pang K, Prlić A, Nakane T, Zardecki C, Voigt M, Berman HM, Bourne PE, Rose PW.
Bioinformatics. 2015 Jan 1;31(1):126-7.
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.
Rose PW, Prlić A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK.
Nucleic Acids Res. 2015 Jan;43(Database issue):D345-56.
The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology.
Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK.
PLoS Biol. 2015 May 5;13(5):e1002140
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.
Prlić A, Kalro T, Bhattacharya R, Christie C, Burley SK, Rose PW.
Bioinformatics. 2016 Dec 15;32(24):3833-3835.
Using the Tools and Resources of the RCSB Protein Data Bank.
Costanzo LD, Ghosh S, Zardecki C, Burley SK.
Curr Protoc Bioinformatics. 2016 Sep 7;55:1.9.1-1.9.35.
The RCSB protein data bank: integrative view of protein, gene and 3D structural information.
Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK.
Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281.
| | Protein-Compound Interactions | | | Genes / Proteins: | 123,564 | | Last Content Update: | August 22nd, 2017 |
| | Arabidopsis thaliana, Escherichia coli, Bos taurus, Rattus norvegicus, Homo sapiens, Saccharomyces cerevisiae, Mus musculus, Xenopus laevis, Drosophila melanogaster, Plasmodium falciparum, Helicobacter pylori, Bacillus subtilis, Human immunodeficiency virus | | 1640 |  |
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