| TarBase | | TarBase | | http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index | | March 9th, 2017 | | A manually curated collection of experimentally tested miRNA targets. Each target site is described by the miRNA that binds it, the gene in which it occurs, the nature of the experiments that were conducted to test it, the sufficiency of the site to induce translational repression and/or cleavage, and the paper from which all these data were extracted. | | | | Primary | | Free to all users | TarBase: A comprehensive database of experimentally supported animal microRNA targets.
Sethupathy P, Corda B, Hatzigeorgiou AG.
RNA. 2006 Feb;12(2):192-7.
The database of experimentally supported targets: a functional update of TarBase
Papadopoulos GL, Reczko M, Simossis VA, Sethupathy P, Hatzigeorgiou AG.
Nucleic Acids Res. 2008 Oct 27.
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support.
Vergoulis T, Vlachos IS, Alexiou P, Georgakilas G, Maragkakis M, Reczko M, Gerangelos S, Koziris N, Dalamagas T, Hatzigeorgiou AG
Nucleic Acids Res. 2012 Jan;40(Database issue):D222-9.
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions.
Vlachos IS, Paraskevopoulou MD, Karagkouni D, Georgakilas G, Vergoulis T, Kanellos I, Anastasopoulos IL, Maniou S, Karathanou K, Kalfakakou D, Fevgas A, Dalamagas T, Hatzigeorgiou AG.
Nucleic Acids Res. 2015 Jan;43(Database issue):D153-9.
DIANA-TarBase and DIANA Suite Tools: Studying Experimentally Supported microRNA Targets.
Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG.
Curr Protoc Bioinformatics. 2016 Sep 7;55:12.14.1-12.14.18.
Functional Analysis of miRNAs Using the DIANA Tools Online Suite.
Vlachos IS, Hatzigeorgiou AG.
Methods Mol Biol. 2017;1517:25-50.
| | Transcription Factors / Gene Regulatory Networks, Protein-Compound Interactions | | | Interactions / Reactions: | 500,000 | | Last Content Update: | unknown |
| | Rattus norvegicus, Caenorhabditis elegans, Homo sapiens, Mus musculus, Danio rerio, Drosophila melanogaster | | 148 |  |
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