Pathguide: the pathway resource list
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Full Record: GO  
Short NameGO
Full NameGene Ontology Consortium
URLhttp://www.geneontology.org
Last ObservedFebruary 8th, 2017
DescriptionGO provides an ontology of pathways (aka biological process) and constituent sub-pathways. In addition GO is now adding links between biological process and molecular function which will provide a terminology for all of the individual reaction steps and pathway terms, and the relationships among them.
Sample Data URL 
Data SourceSecondary
AvailabilityFree to all users
PubMed ArticlesGene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G.
Nat Genet. 2000 May;25(1):25-9


Creating the gene ontology resource: design and implementation.
Gene Ontology Consortium.
Genome Res. 2001 Aug;11(8):1425-33


The Gene Ontology (GO) database and informatics resource.
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R; Gene Ontology Consortium.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61


The Gene Ontology (GO) project in 2006.
Gene Ontology Consortium.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D322-6


The Gene Ontology project in 2008.
Gene Ontology Consortium.
Nucleic Acids Res. 2008 Jan;36(Database issue):D440-4


The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species.
Reference Genome Group of the Gene Ontology Consortium.
PLoS Comput Biol. 2009 Jul;5(7):e1000431.


The Gene Ontology in 2010: extensions and refinements.
Gene Ontology Consortium
Nucleic Acids Res. 2010 Jan;38(Database issue):D331-5.


The Gene Ontology: enhancements for 2011.
Gene Ontology Consortium
Nucleic Acids Res. 2012 Jan;40(Database issue):D559-64.


On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.
Thomas PD, Wood V, Mungall CJ, Lewis SE, Blake JA; Gene Ontology Consortium.
PLoS Comput Biol. 2012;8(2):e1002386.


Gene Ontology annotations and resources.
Gene Ontology Consortium
Nucleic Acids Res. 2013 Jan;41(Database issue):D530-5.


Gene Ontology Consortium: going forward.
Gene Ontology Consortium.
Nucleic Acids Res. 2015 Jan;43(Database issue):D1049-56.


Expansion of the Gene Ontology knowledgebase and resources.
The Gene Ontology Consortium.
Nucleic Acids Res. 2017 Jan 4;45(D1):D331-D338.

Types of DataProtein-Protein Interactions, Metabolic Pathways, Signaling Pathways
Types of Tools
Contents
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Last Content Update: July 16th, 2017
Major Organisms
Relative Popularity10200
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"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

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