| REDfly | | Regulatory Element Database for Drosophila | | http://redfly.ccr.buffalo.edu/ | | March 8th, 2017 | | REDflyis a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly regulatory elements along with their DNA sequence, their associated genes, and the expression patterns they direct. Expression patterns are annotated using a defined anatomy ontology to enable high interoperability with FlyBase, FlyExpress, the BDGP in situ hybridization database, and other model organism resources. | | | | Primary | | Free to all users | Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
Bergman CM, Carlson JW, Celniker SE.
Bioinformatics. 2005 Apr 15;21(8):1747-9.
REDfly: a Regulatory Element Database for Drosophila.
Gallo SM, Li L, Hu Z, Halfon MS.
Bioinformatics. 2006 Feb 1;22(3):381-3.
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.
Halfon MS, Gallo SM, Bergman CM.
Nucleic Acids Res. 2008 Jan;36(Database issue):D594-8.
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.
Gallo SM, Gerrard DT, Miner D, Simich M, Des Soye B, Bergman CM, Halfon MS
Nucleic Acids Res. 2011 Jan;39(Database issue):D118-23.
| | Transcription Factors / Gene Regulatory Networks | | | Genes / Proteins: | 630 | | Interactions / Reactions: | 2,070 | | Experiments / PubMed IDs: | 695 | | Last Content Update: | January 26th, 2017 |
| | Drosophila melanogaster | | 90 |  |
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