| HMDB | | Human Metabolome Database | | http://www.hmdb.ca/ | | February 21st, 2017 | | Contains detailed information about small molecule metabolites found in the human body. Combines chemical, clinical, and molecular biology/biochemistry data. | | | | Primary | | Free to all users | HMDB: the Human Metabolome Database.
Wishart DS, Tzur D, Knox C, Eisner R, Guo AC, Young N, Cheng D, Jewell K, Arndt D, Sawhney S, Fung C, Nikolai L, Lewis M, Coutouly MA, Forsythe I, Tang P, Shrivastava S, Jeroncic K, Stothard P, Amegbey G, Block D, Hau DD, Wagner J, Miniaci J, Clements M, Gebremedhin M, Guo N, Zhang Y, Duggan GE, Macinnis GD, Weljie AM, Dowlatabadi R, Bamforth F, Clive D, Greiner R, Li L, Marrie T, Sykes BD, Vogel HJ, Querengesser L.
Nucleic Acids Res. 2007 Jan;35(Database issue):D521-6.
HMDB: a knowledgebase for the human metabolome.
Wishart DS, Knox C, Guo AC, Eisner R, Young N, Gautam B, Hau DD, Psychogios N, Dong E, Bouatra S, Mandal R, Sinelnikov I, Xia J, Jia L, Cruz JA, Lim E, Sobsey CA, Shrivastava S, Huang P, Liu P, Fang L, Peng J, Fradette R, Cheng D, Tzur D, Clements M, Lewis A, De Souza A, Zuniga A, Dawe M, Xiong Y, Clive D, Greiner R, Nazyrova A, Shaykhutdinov R, Li L, Vogel HJ, Forsythe I.
Nucleic Acids Res. 2008 Oct 25
Exploring human metabolites using the human metabolome database.
Forsythe IJ, Wishart DS
Curr Protoc Bioinformatics. 2009 Mar;Chapter 14:Unit14.8.
HMDB 3.0--The Human Metabolome Database in 2013.
Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, Liu Y, Djoumbou Y, Mandal R, Aziat F, Dong E, Bouatra S, Sinelnikov I, Arndt D, Xia J, Liu P, Yallou F, Bjorndahl T, Perez-Pineiro R, Eisner R, Allen F, Neveu V, Greiner R, Scalbert A
Nucleic Acids Res. 2013 Jan;41(Database issue):D801-7.
| | Metabolic Pathways | | | Small Molecules: | 83,479 | | Genes / Proteins: | 5,778 | | Interactions / Reactions: | 6,302 | | Pathways: | 1,133 | | Experiments / PubMed IDs: | 69,890 | | Last Content Update: | August 13th, 2017 |
| | Homo sapiens | | 1060 |  |
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