Pathguide: the pathway resource list
Home BioPAX cBio MSKCC
Full Record: MetNetDB  
Short NameMetNetDB
Full NameMetabolic Network Exchange
Last ObservedFebruary 23rd, 2017
DescriptionContains information on networks of metabolic and regulatory and interactions in Arabidopsis. This information is based on input from biologists in their area of expertise. In addition to the MetNet-curated interactions, we provide Aracyc-curated pathways and AGRIS-curated regulatory network. The data in MetNetDB is updated regularly. This information is accessible only by downloading files for import into Cytoscape.
Sample Data URL
Data SourceSecondary
AvailabilityFree to all users
PubMed ArticlesIntegration of metabolic networks and gene expression in virtual reality.
Yang Y, Engin L, Wurtele ES, Cruz-Neira C, Dickerson JA.
Bioinformatics. 2005 Sep 15;21(18):3645-50. Epub 2005 Jul 14.

Automatic extraction of biomolecular interactions: an empirical approach.
Zhang L, Berleant D, Ding J, Wurtele ES.
BMC Bioinformatics. 2013 Jul 24;14:234.

Types of DataMetabolic Pathways
Types of ToolsText mining, Expression analysis, Pathway diagram tools
Pathways: 640
Last Content Update: July 30th, 2013
Major OrganismsArabidopsis thaliana
Relative Popularity4
Homepage Uptime StatisticsWebsite tracker - uptime monitoring service
Back to the List

"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

website tracker