Pathguide: the pathway resource list
Home BioPAX cBio MSKCC
 
Full Record: miRBase  
Short NamemiRBase
Full NamemicroRNA Database
URLhttp://www.mirbase.org/index.shtml
Last ObservedMarch 6th, 2017
DescriptionmiRBase contains information about microRNAs including predicted mRNA targets, which represent potential translation regulatory interactions. It is automatically updated using a computational pipeline.
Sample Data URL 
Data SourceSecondary
AvailabilityFree to all users
PubMed ArticlesThe microRNA Registry.
Griffiths-Jones S.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11


miRBase: microRNA sequences, targets and gene nomenclature.
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.


miRBase: the microRNA sequence database.
Griffiths-Jones S
Methods Mol Biol. 2006;342:129-38.


miRBase: tools for microRNA genomics
Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.
Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8.


miRBase: microRNA sequences and annotation.
Griffiths-Jones S
Curr Protoc Bioinformatics. 2010 Mar;Chapter 12:Unit 12.9.1-10.


miRBase: integrating microRNA annotation and deep-sequencing data.
Kozomara A, Griffiths-Jones S
Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7.


miRBase: annotating high confidence microRNAs using deep sequencing data.
Kozomara A, Griffiths-Jones S.
Nucleic Acids Res. 2014 Jan;42(Database issue):D68-73.

Types of DataTranscription Factors / Gene Regulatory Networks
Types of ToolsPathway discovery tools
Contents
Small Molecules: 28,645
Last Content Update: June 1st, 2014
Major OrganismsArabidopsis thaliana, Rattus norvegicus, Caenorhabditis elegans, Homo sapiens, Mus musculus, Drosophila melanogaster
Relative Popularity144
Homepage Uptime StatisticsWebsite tracker - uptime monitoring service Host-tracker.com
Back to the List



"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

website tracker