miRBase | microRNA Database | http://www.mirbase.org/index.shtml | March 6th, 2017 | miRBase contains information about microRNAs including predicted mRNA targets, which represent potential translation regulatory interactions. It is automatically updated using a computational pipeline. | | Secondary | Free to all users | The microRNA Registry. Griffiths-Jones S. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11
miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.
miRBase: the microRNA sequence database. Griffiths-Jones S Methods Mol Biol. 2006;342:129-38.
miRBase: tools for microRNA genomics Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8.
miRBase: microRNA sequences and annotation. Griffiths-Jones S Curr Protoc Bioinformatics. 2010 Mar;Chapter 12:Unit 12.9.1-10.
miRBase: integrating microRNA annotation and deep-sequencing data. Kozomara A, Griffiths-Jones S Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7.
miRBase: annotating high confidence microRNAs using deep sequencing data. Kozomara A, Griffiths-Jones S. Nucleic Acids Res. 2014 Jan;42(Database issue):D68-73.
| Transcription Factors / Gene Regulatory Networks | Pathway discovery tools | Small Molecules: | 28,645 | Last Content Update: | June 1st, 2014 |
| Arabidopsis thaliana, Rattus norvegicus, Caenorhabditis elegans, Homo sapiens, Mus musculus, Drosophila melanogaster | 144 | |
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