Pathguide: the pathway resource list
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Full Record: TRED  
Short NameTRED
Full NameTranscriptional Regulatory Element Database
URLhttps://cb.utdallas.edu/cgi-bin/TRED/tred.cgi?process=home
Last ObservedMarch 9th, 2017
DescriptionTRED is a manually curated database of regulatory elements (promoters, transcription factor binding sites, both cis and trans) in mammalian genomes.
Sample Data URLhttp://rulai.cshl.edu/TRED/GRN/Brca.htm
Data SourcePrimary
AvailabilityFree to all users
PubMed ArticlesTRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies.
Zhao F, Xuan Z, Liu L, Zhang MQ.
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D103-7.


TRED: a transcriptional regulatory element database, new entries and other development.
Jiang C, Xuan Z, Zhao F, Zhang MQ.
Nucleic Acids Res. 2007 Jan;35(Database issue):D137-40.

Types of DataTranscription Factors / Gene Regulatory Networks
Types of Tools
Contents
Genes / Proteins: 4,996
Interactions / Reactions: 1,765
Last Content Update: October 17th, 2006
Major OrganismsRattus norvegicus, Homo sapiens, Mus musculus
Relative Popularity91
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"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

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