| MetaCyc | | Metabolic Pathway Database | | http://metacyc.org/ | | February 22nd, 2017 | | The MetaCyc metabolic pathway database contains pathways from over 2816 different organisms. MetaCyc describes metabolic pathways, reactions, enzymes, and substrate compounds. The MetaCyc data were gathered from a variety of literature and on-line sources, and contain citations to the source of each pathway. | | | | Primary | | Free to academic users | MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Krieger CJ, Zhang P, Mueller LA, Wang A, Paley S, Arnaud M, Pick J, Rhee SY, Karp PD.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D438-42
MetaCyc and AraCyc. Metabolic pathway databases for plant research.
Zhang P, Foerster H, Tissier CP, Mueller L, Paley S, Karp PD, Rhee SY
Plant Physiol. 2005 May;138(1):27-37.
MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D511-6
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R, Foerster H, Fulcher CA, Kaipa P, Krummenacker M, Latendresse M, Paley S, Rhee SY, Shearer AG, Tissier C, Walk TC, Zhang P, Karp PD.
Nucleic Acids Res. 2008 Jan;36(Database issue):D623-31.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD.
Nucleic Acids Res. 2010;38 (Database issue):D473-D479
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD
Nucleic Acids Res. 2012 Jan;40(Database issue):D742-53.
Data mining in the MetaCyc family of pathway databases.
Karp PD, Paley S, Altman T.
Methods Mol Biol. 2013;939:183-200.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD.
Nucleic Acids Res. 2014 Jan;42(Database issue):D459-71.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Karp PD.
Nucleic Acids Res. 2016 Jan 4;44(D1):D471-80.
| | Metabolic Pathways | | Pathway diagram tools | | Small Molecules: | 14,003 | | Genes / Proteins: | 11,547 | | Interactions / Reactions: | 14,347 | | Pathways: | 2,572 | | Experiments / PubMed IDs: | 54,196 | | Last Content Update: | August 15th, 2017 |
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