Pathguide: the pathway resource list
Home BioPAX cBio MSKCC
 
Analysis
Statistics
Database Interactions
Contact
Comments, Questions, Suggestions are Always Welcome!

Pathguide Resource Search

Your search returned ... with the following search parameters:

News
Major new update of Pathguide September 2017
We now have information for over 690 resources!
Major new update of Pathguide August 2013
We now have information about ~550 resources!
Visual navigation added May 2010
Click the 'Database interactions' link on the left menu to access.
Major update
All resources were recently reviewed and many new ones were added
Get the Stats
Detailed Pathguide resource statistics now available
Pathguide Published
Please cite the Pathguide Publication


Protein-Protein Interactions  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
AnimalTFDB - Animal Transcription Factor DatabaseDetails
Free
APID - Agile Protein Interactomes DataServerDetails
Free
PSI-MI
BioGRID - Biological General Repository for Interaction DatasetsDetails
Free
PSI-MI
CORUM - Comprehensive resource of mammalian protein complexesDetails
Free
PSI-MI
COXPRESdb - Coexpressed Gene DatabaseDetails
Free
DAPID - Domain Annotated Protein-protein Interaction DatabaseDetailsUnavailable
dbSNO - database of Cysteine S-NitrOsylationDetails
Free
DIP - Database of Interacting ProteinsDetailsAcademic
PSI-MI
DOMINO - Domain Peptide Interactions DatabaseDetailsUnavailable
FunCoup - Networks of Functional CouplingDetails
Free
GeneMANIA - GeneMANIADetails
Free
GermOnline - GermOnlineDetails
Free
GPCR-PD - G protein-coupled receptors protein databaseDetailsUnavailable
HDR - Homeodomain Resource DatabaseDetails
Free
HINT - High-quality Interactomes Details
Free
HitPredict - HitPredictDetails
Free
PSI-MI
HumanPSD - Human Proteome Survey Database DetailsLicense
I2D - Interologous Interaction DatabaseDetailsAcademic
PSI-MI
IID - Integrated Interactions DatabaseDetailsAcademic
InteroPorc - Automatic molecular interaction predictionsDetails
Free
PSI-MI
iRefIndex - Interaction Reference IndexDetails
Free
PSI-MI
KinaseDB - Kinase Pathway DatabaseDetailsUnavailable
MiMI - Michigan Molecular InteractionsDetailsUnavailable
PSI-MI
MINT - Molecular Interaction DatabaseDetails
Free
PSI-MI
MIPS-MPPI - MIPS Mammalian Protein-Protein Interaction DatabaseDetails
Free
PSI-MI
miRIAD - intragenic microRNA databaseDetailsAcademic
Pathway Studio - Pathway StudioDetailsLicense
Pathways Knowledge Base - Ingenuity Pathways Knowledge BaseDetailsLicense
PC - Pathway CommonsDetails
Free
PSI-MI
BioPAX
PINA - Protein Interaction Network AnalysisDetails
Free
PPID - Protein-Protein Interaction DatabaseDetailsUnavailable
PPISearch - Protein-Protein Interaction SearchDetails
Free
Predictome - PredictomeDetails
Free
PRIMOS - Protein Interaction and Molecule Search databaseDetailsUnavailable
PROMISCUOUS - PROMISCUOUSDetails
Free
Proteome - DetailsUnavailable
PTMcode - PTMcode 2Details
Free
PubGene - PubGeneDetails
Free
RegPhos - Regulatory Network in Protein PhosphorylationDetails
Free
RGD - Rat Genome Database pathway resourceDetails
Free
SIGNOR - The SIGnaling Network Open ResourceDetails
Free
SBML
SuperTarget - SuperTargetDetails
Free
SYNDB - Synapse DatabaseDetails
Free
T2D-Db - T2D-Db: An Integrated Data Resource on Type 2 DiabetesDetailsUnavailable
Back to the Top

Metabolic Pathways  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Signaling Pathways  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Pathway Diagrams  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Transcription Factors / Gene Regulatory Networks  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Protein-Compound Interactions  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Genetic Interaction Networks  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Protein Sequence Focused  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Other  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
Back to the Top

Note on Web Popularity:
As indexed by Google, popularity is estimated by the number of web pages that mention each resource's homepage (subtracting links from the resource itself). This number provides a rough indication of the relative popularity of each resource; this should not be interpreted as an accurate measure of resource significance.
There are a number of reasons why a resource may have no links, such as: it may be a very new resource and no pages link to it yet; it may have been recently relocated and no links point to the new location; it may be a private resource and no links point to the brochure page; it may be a defunct resource without a valid link.
Thanks to Robert Hoffmann for help updating the Google ranking.

"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

website tracker