Pathguide: the pathway resource list
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News
Major new update of Pathguide August 2013
We now have information about ~550 resources!.
Visual navigation added May 2010
Click the 'Database interactions' link on the left menu to access.
Major update
All resources were recently reviewed and many new ones were added
Get the Stats
Detailed Pathguide resource statistics now available
Pathguide Published
Please cite the Pathguide Publication



Protein-Protein Interactions  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
AnimalTFDB - Animal Transcription Factor DatabaseDetails
Free
APID - Agile Protein Interaction DataAnalyzerDetails
Free
BioGRID - Biological General Repository for Interaction DatasetsDetails
Free
PSI-MI
CORUM - Comprehensive resource of mammalian protein complexesDetails
Free
PSI-MI
COXPRESdb - Coexpressed Gene DatabaseDetails
Free
DAPID - Domain Annotated Protein-protein Interaction DatabaseDetails
Free
DIP - Database of Interacting ProteinsDetailsAcademic
PSI-MI
DOMINO - Domain Peptide Interactions DatabaseDetails
Free
FunCoup - Networks of Functional CouplingDetails
Free
GeneMANIA - GeneMANIADetails
Free
GermOnline - GermOnlineDetails
Free
GPCR-PD - G protein-coupled receptors protein databaseDetailsLicense
HitPredict - HitPredictDetails
Free
HumanPSD - Human Proteome Survey Database DetailsLicense
I2D - Interologous Interaction DatabaseDetailsAcademic
PSI-MI
InteroPorc - Automatic molecular interaction predictionsDetails
Free
PSI-MI
iRefIndex - Interaction Reference IndexDetails
Free
PSI-MI
KinaseDB - Kinase Pathway DatabaseDetails
Free
MiMI - Michigan Molecular InteractionsDetails
Free
PSI-MI
MINT - Molecular Interaction DatabaseDetails
Free
PSI-MI
MIPS-MPPI - MIPS Mammalian Protein-Protein Interaction DatabaseDetails
Free
PSI-MI
Pathways Knowledge Base - Ingenuity Pathways Knowledge BaseDetailsLicense
PC - Pathway CommonsDetails
Free
PSI-MI
BioPAX
PINA - Protein Interaction Network AnalysisDetails
Free
PPID - Protein-Protein Interaction DatabaseDetailsLicense
Predictome - PredictomeDetails
Free
PRIMOS - Protein Interaction and Molecule Search databaseDetails
Free
PROMISCUOUS - PROMISCUOUSDetails
Free
Proteome - DetailsLicense
PTMcode - PTMcodeDetails
Free
PubGene - PubGeneDetails
Free
ResNet - ResNetDetailsLicense
SuperTarget - SuperTargetDetails
Free
SYNDB - Synapse DatabaseDetails
Free
T2D-Db - T2D-Db: An Integrated Data Resource on Type 2 DiabetesDetails
Free
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Metabolic Pathways  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
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Signaling Pathways  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
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Pathway Diagrams  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
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Transcription Factors / Gene Regulatory Networks  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
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Protein-Compound Interactions  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
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Genetic Interaction Networks  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
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Protein Sequence Focused  
Database Name (Order: alphabetically | by web popularity Note ) Full Record Availability Standards
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Note on Web Popularity:
As indexed by Google, popularity is estimated by the number of web pages that mention each resource's homepage (subtracting links from the resource itself). This number provides a rough indication of the relative popularity of each resource; this should not be interpreted as an accurate measure of resource significance.
There are a number of reasons why a resource may have no links, such as: it may be a very new resource and no pages link to it yet; it may have been recently relocated and no links point to the new location; it may be a private resource and no links point to the brochure page; it may be a defunct resource without a valid link.
Thanks to Robert Hoffmann for help updating the Google ranking.


"Pathguide: the pathway resource list" is maintained by Gary Bader1,2 and Sylva Donaldson2.
The website was originally created by Michael Cary 1 and was significantly updated and redesigned by Vuk Pavlovic2.
Thanks to Emek Demir for the Pathguide name.

1. Sander Group at Memorial Sloan-Kettering Cancer Center
2. Bader Lab

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